PolymiRTS Database

Linking polymorphisms in microRNA target sites with complex traits. Polymorphism in microRNA Target Site (PolymiRTS) is a database of naturally occurring DNA variations in putative microRNA (miRNA) target sites. This database characterizes PolymiRTS as a new class of sequence variants underlying gene expression traits and/or higher order mammalian traits. (Reference)

CTCFBSDB

A CTCF binding site database for characterization of vertebrate genomic insulators. The database is a comprehensive collection of experimentally identified and computationally predicted CTCF binding sites. It is also a resource for studying insulators and their roles in demarcating functional genomic domains and regulating gene expression. (Reference)

nsSNPAnalyzer

A web tool to predict whether a nonsynonymous single nucleotide polymorphism (nsSNP) has a deleterious effect. nsSNPAnalyzer extracts structural and evolutionary information from a query nsSNP and uses a machine learning method called Random Forest to predict the nsSNP's phenotypic effect. (Reference)

GeneInfoViz

A Gene Ontology tool to construct and visualize gene relation networks. Directed acyclic graphs are also generated to show the hierarchical structure of the Gene Ontology tree. (Reference)

Gifi Array Analyzer

A Java program for interpreting microarray data in the context of existing biological knowledge. It implements Homogeneity Analysis, a graphical multivariate statistical method for analyzing categorical data, to Integrate the analysis of microarray data and gene functional classification data. (Reference)

QSB

An integrative computational tool for genetical genomics.